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	<title>Sometimes I listen to myself &#187; Science is broken</title>
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		<title>What&#8217;s this internet thing, now? (The science version)</title>
		<link>http://blog.charleskiyanda.com/2008/02/25/whats-this-internet-thing-now-the-science-version/</link>
		<comments>http://blog.charleskiyanda.com/2008/02/25/whats-this-internet-thing-now-the-science-version/#comments</comments>
		<pubDate>Mon, 25 Feb 2008 08:11:43 +0000</pubDate>
		<dc:creator>Charles Kiyanda</dc:creator>
				<category><![CDATA[Science is broken]]></category>

		<guid isPermaLink="false">http://blog.charleskiyanda.com/2008/02/25/whats-this-internet-thing-now-the-science-version/</guid>
		<description><![CDATA[<p>I&#8217;ve been reading the new music strategies blog by Andrew Dubber and have been enjoying my read lately. The blog is about the world of online music and the interaction of musical artists, the internet and the fans, to a certain point. I&#8217;ve been finding a lot of parallels between Dubber&#8217;s world of online music and <span style="color:#777"> . . . &#8594; Read More: <a href="http://blog.charleskiyanda.com/2008/02/25/whats-this-internet-thing-now-the-science-version/">What&#8217;s this internet thing, now? (The science version)</a></span>]]></description>
			<content:encoded><![CDATA[<p>I&#8217;ve been reading the <a href="http://newmusicstrategies.com/" title="Andrew Dubber's Blog" target="_blank">new music strategies blog by Andrew Dubber</a> and have been enjoying my read lately. The blog is about the world of online music and the interaction of musical artists, the internet and the fans, to a certain point. I&#8217;ve been finding a lot of parallels between Dubber&#8217;s world of online music and what I&#8217;m trying to express here about scientific communication.</p>
<p>Dubber has gone through the exercise of describing what his conception of online music is. To achieve that goal, he broke it down into pieces. A first post looks at what <a href="http://newmusicstrategies.com/2008/01/03/first-principles-part-1-music/" title="Music" target="_blank">&#8216;music&#8217;</a> means. A second post looks at what <a href="http://newmusicstrategies.com/2008/01/11/first-principles-part-2-online/" title="Online" target="_blank">&#8216;online&#8217;</a> is and a final post looks at what it means to talk about <a href="http://newmusicstrategies.com/2008/01/19/first-principles-part-3-music-online/" title="Online Music" target="_blank">&#8216;online music&#8217;</a>.</p>
<p>What I found most interesting was about the third post, describing what online music is. The analogy Dubber uses over and over again is to think about the internet as one would think about electricity. It&#8217;s a service which allows you to plug-in all the appliances you need and use. It&#8217;s standard, so you can build your own appliances to suit your specific needs. Starting from there, it&#8217;s easy to understand that the internet is more than &#8220;internet explorer, msn and facebook&#8221;. (I guess this would have been myspace a year ago, but hey, times change.) The internet is the backbone of the new media applications we use and several unknown applications are just waiting to be created. One of Dubber&#8217;s suggestions to artists looking to make use of &#8220;the internet&#8221; or &#8220;new media&#8221; is to stop asking &#8220;What are the available solutions and how can I use them?&#8221; but rather to ask &#8220;What are my needs and can I meet them by building a solution that uses the internet as a communication medium?&#8221; It makes for a slightly longer question, but a oh so richer set of possibilities.</p>
<p>I think we need to start an analogous process for how we disseminate science. The answer we&#8217;ve given to the equation &#8220;science papers + the internet = ?&#8221; has for too long been, well, &#8220;science papers on the internet.&#8221;</p>
<p>In computer terms, we&#8217;ve updated part of the front end, how we read and get the papers, but we haven&#8217;t changed the back end, how we write and publish scientific papers. I think it&#8217;s time to start rethinking the vessel, to start to question the packaging, not of scientific papers, but of scientific information.</p>
<p>I&#8217;m not saying the project I&#8217;m working on will be a revolution from the start, but I do think it should allows us to replicate online something that&#8217;s close to what we do now (write, submit, review, rebut, publish) while opening up the possibilities to those who want to explore them. Ideally, different &#8220;publication models&#8221; will be able to co-exist so that we can simply see what the differences are, what the implications of the new models are and decide.</p>
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		<title>To actually be coded soon: An overview</title>
		<link>http://blog.charleskiyanda.com/2007/12/05/to-actually-be-coded-soon-an-overview/</link>
		<comments>http://blog.charleskiyanda.com/2007/12/05/to-actually-be-coded-soon-an-overview/#comments</comments>
		<pubDate>Wed, 05 Dec 2007 03:48:43 +0000</pubDate>
		<dc:creator>Charles Kiyanda</dc:creator>
				<category><![CDATA[Science is broken]]></category>

		<guid isPermaLink="false">http://blog.charleskiyanda.com/2007/12/05/to-actually-be-coded-soon-an-overview/</guid>
		<description><![CDATA[<p>Ok, so I keep going about how I have this great idea that could improve the way scientists communicate. I also keep rambling on about what scientific communication is (or at least what I think it is), what it should be, what it will have to be. Finally, as promised, here is the overview of what <span style="color:#777"> . . . &#8594; Read More: <a href="http://blog.charleskiyanda.com/2007/12/05/to-actually-be-coded-soon-an-overview/">To actually be coded soon: An overview</a></span>]]></description>
			<content:encoded><![CDATA[<p>Ok, so I keep going about how I have this great idea that could improve the way scientists communicate. I also keep rambling on about what scientific communication is (or at least what I think it is), what it should be, what it will have to be. Finally, as promised, here is the overview of what my brand new system will be&#8230;once it&#8217;s actually coded up that is.</p>
<p>I&#8217;m probably a little stupid for writing this as it isn&#8217;t done yet, so I&#8217;m basically levelling the playing field between myself and all the people who could actually get this done but didn&#8217;t have the idea in the first place. Part of my naiveté is probably due to the fact that I believe</p>
<ul>
<li>nobody reads this blog (a bad assumption if I&#8217;m going to keep writing on it);</li>
<li>nobody but me thinks this idea is going to work (also a bad assumption if I&#8217;m going to try and attract users);</li>
<li>nobody but me thinks there&#8217;s money to be done with this (also a bad assumption as I&#8217;ve already said this is going to be ad-supported)</li>
<li>somehow, having had this idea first will allow me to get it running faster (a bad idea since I&#8217;m not that good a programmer and I&#8217;m going to need someone to help me get it done)</li>
<li>I&#8217;ll be able to keep the really juicy bits for myself so that I still have an edge (I&#8217;ll try).</li>
</ul>
<p>Without further due, here it is.</p>
<p><span id="more-24"></span></p>
<p><strong>Extending traditional peer-review</strong></p>
<p>Currently, the current state of affairs is that before a paper is peer-reviewed it is deemed unsuitable. At least, that&#8217;s the official story. This isn&#8217;t entirely correct, as we&#8217;ve surely all referenced some internal reports that haven&#8217;t been peer-reviewed. Also, if we haven&#8217;t referenced them (as we should have) we&#8217;ve surely used some. Those of you in compressible fluid dynamics should know about the UTIAS reports, which are truly a gold mine. Absolutely not peer-reviewed, yet incredibly valuable. So why is it again we keep claiming that non-peer-reviewed material is bad? I think it&#8217;s time we extend traditional peer-review.</p>
<p>In this new system, everyone participates. As a scientist, you do research and then write a &#8220;paper&#8221;. (I&#8217;ll put quotes here because of the next point.) You then &#8220;publish&#8221; your &#8220;paper&#8221; by uploading it onto this system. Now this is where the differences with the traditional system start.</p>
<p>From this point on, your &#8220;paper&#8221; is available to everyone and anyone, including people outside of the system. (Maybe there&#8217;ll be restrictions here, so that if you wish, you can keep the report to yourself or only for your contacts, etc. Details, details.) Everyone who is registered on the system (and they should all be scientist) can &#8220;review&#8221; your paper (this could be a simple &#8216;good work&#8217; comment to an extensive &#8216;you have miscalculated the probability of X&#8217; type of review). You (or another user) can also go on the system and start a &#8220;journal&#8221;. If the &#8220;editor&#8221; of the &#8220;journal&#8221; wants to, he can decide to just add your &#8220;paper&#8221; to his &#8220;journal&#8221;, with or without traditional peer-review. You could also &#8220;submit&#8221; (read suggest to add) your paper to a &#8220;journal&#8221;. All the tools should be there for you, as an &#8220;editor&#8221;, to send a paper that&#8217;s been submitted to you, or that you just thought was really good and relevant to your &#8220;journal&#8221; through peer-review. You&#8217;ll be able to send a message to someone saying &#8216;Please review this article and send me your comments. This is for journal Y.&#8217;</p>
<p>In a nutshell, all &#8220;published&#8221; &#8220;papers&#8221; should be available whether they&#8217;ve gone through traditional peer-review or not. Traditionally peer-reviewed &#8220;journals&#8221; should coexist with the ones that don&#8217;t go through traditionally peer-review (or don&#8217;t care about peer-review at all).</p>
<p><strong>Extending the definition of a paper</strong></p>
<p>Today, in 2007, a scientific paper is still a text of variable length with static images. If you add a video or an animation of numerical results or something else which isn&#8217;t traditionally there, it becomes a different animal. Something that doesn&#8217;t really go through peer-review still today, really. I mean, seriously, some journals are claiming proudly that the paper has been enhanced on the web by including the original color figures. I think a &#8220;paper&#8221; should just be a collection of related scientific stuff. So I do this research, simulating forced coupled oscillators in a random lattice. Good. So I write it up, let&#8217;s say in a text. Because text is good. I also have these really good animations. I&#8217;ll include those too. Maybe my code is really clever, so I&#8217;ll include the source code too. So it looks something like this</p>
<p><em>On the funnyness of coupled randomly distributed forced oscillators:</em></p>
<ul>
<li><em>text with static figures (maybe in a pdf</em></li>
<li><em>animations</em></li>
<li><em>source code</em></li>
</ul>
<p>All wrapped up in one. When you navigate the system, what you see is the title. Maybe you see an abstract with that. And if the author wants, maybe the abstract has animations with it. Maybe the abstract is only a video of me talking with animations from my results on top of that. So you like the intro. You click on the title. Voilà. Now you can review all the different bits. It&#8217;s all one package.</p>
<p>You want to download everything and look at it offline? Ok. We&#8217;ll wrap everything up in a zip file or a tar file or we&#8217;ll just download them as individual files to the place that you want.</p>
<p>In a nutshell, we need to go beyond text. Text and static images are a powerful way of expaining science, but it&#8217;s limited. Including moving objects expands our possibilities, but also brings about new pitfalls. Some are well-known, you need only open the powerpoint animations dialog to know what I&#8217;m talking about.</p>
<p><strong>Expanding the concept of a journal</strong></p>
<p>In the context of this new system,  a journal is really broad. I&#8217;m just going to define a journal as a collection of articles with one or several editors, i.e. people who pick the articles that become part of the journal. The scope and selection process are open-ended questions.</p>
<p>So a traditional journal is still a &#8220;journal&#8221; under my definition. There&#8217;s one or  more editors who pick articles on a given subject (the scope) and select them via traditional peer-review.</p>
<p>When you think about it, an individual scientist webpage is also a &#8220;journal&#8221; under my definition. There&#8217;s typically only one editor (you) with articles by a certain person (the scope) and the selection process is personal. If you wrote it and it&#8217;s good enough according to you (or representative or if you just wrote it) it makes it on.</p>
<p>A research group webpage is also a &#8220;journal&#8221; under my definition. It has several editors who pick articles on a given subject (the scope) and the selection process is not through peer-review. It&#8217;s based on how much the editors thought a particular piece of work is relevant and accurate, etc.</p>
<p>Care to think of other possibilities? You&#8217;ll have the choice in this new system.</p>
<p><strong>Various unrelated but important tidbits</strong></p>
<p><em>Open standards</em></p>
<p>This new system should embrace open standards (standards which everyone can use) or defacto standards (like pdf, jpg, etc). Whatever the case, we shouldn&#8217;t invent a new standard and forbid people from using it. If a new standard becomes necessary, let&#8217;s open it so that anyone who wants to use it and write applications that use that standard can. This also guarantees that if you want to take all your data because your computer crashed, you can. Also, if you decide not to use our system anymore, you have all your data readily at hand. It&#8217;s not in a useless proprietary format noboyd else uses. Interoperability is key.</p>
<p><em>Double as a professional social network, but don&#8217;t reveal all the user&#8217;s secrets</em></p>
<p>Let me give an example. I signed up for netflix. They&#8217;ve now added a social function. You can add friends to a list and share movie tastes and reviews, etc. The problem is that once you add them as a friend/contact/whatever name you want to use, you also both get access to ALL the activity on your account. I mean, all of it. I added friends of ours and the system tells me on what date they&#8217;ve returned what movie, what&#8217;s in their waiting list of movies to receive, how they&#8217;ve rated movies. EVERYTHING. This is too much. I&#8217;m uncomfortable with all that information.</p>
<p>So our new system should double as a publishing platform and a social network, but you should be able to limit how readily available information about you is. Information display to other users should be an opt-in not an opt-out. (I&#8217;ll discuss this in a later post still, this netflix experience has shaken me enough to talk about it again.)</p>
<p><em>Strong privacy poliy</em></p>
<p>This new system should only collect the minimum amount of information it needs about the users and it should take a strong stance towards protecting that information. It should be stated loud and clear the type of information which is gathered, how it is gathered, how long it is kept, in what form, what it is used for and what it will not be used for. Privacy and security of gathered data in social networks is important (and especially, what the limits of use of that data are) and the latest Facebook advertising campaign situation is a good example. People who used to take privacy and security of data for granted are taking a stance telling the business &#8220;We don&#8217;t like this.&#8221;</p>
<p><em>Closing word</em></p>
<p>Let me stop now. This is my brief, in a nutshell, overview of what this new system will be. It&#8217;s different from what I had envisioned when I started this blog. Writing about these different related subjects has made me think about the different issues and how to address them. Speaking with different people who have often raised valid criticism has made me review my positions and the above description is what came out.</p>
<p>So now I&#8217;m ready to do it. Coding time it is. Hopefully, there will be something in a rough beta stage in 3-6 months if I can convince my most trusted web developper to embark on the adventure. If I have to code it myself, we&#8217;re talking 6-12 months until there&#8217;s a usable platform, maybe more. Obviously, I&#8217;d like to have this out as soon as possible. Let&#8217;s see how it goes.</p>
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		<title>Science and copyright</title>
		<link>http://blog.charleskiyanda.com/2007/11/07/science-and-copyright/</link>
		<comments>http://blog.charleskiyanda.com/2007/11/07/science-and-copyright/#comments</comments>
		<pubDate>Wed, 07 Nov 2007 06:30:28 +0000</pubDate>
		<dc:creator>Charles Kiyanda</dc:creator>
				<category><![CDATA[Copyright and Society]]></category>
		<category><![CDATA[Science is broken]]></category>

		<guid isPermaLink="false">http://blog.charleskiyanda.com/2007/11/07/science-and-copyright/</guid>
		<description><![CDATA[<p>I swear, in my next post, I&#8217;ll give all the details I think I can give (that is, all the details which are set in my head) about my &#8220;great&#8221; idea for the future of scientific communication. In the meantime, I just want to have a little chat about science and copyright.</p>
<p>Part of the reason I&#8217;m <span style="color:#777"> . . . &#8594; Read More: <a href="http://blog.charleskiyanda.com/2007/11/07/science-and-copyright/">Science and copyright</a></span>]]></description>
			<content:encoded><![CDATA[<p>I swear, in my next post, I&#8217;ll give all the details I think I can give (that is, all the details which are set in my head) about my &#8220;great&#8221; idea for the future of scientific communication. In the meantime, I just want to have a little chat about science and copyright.</p>
<p>Part of the reason I&#8217;m going through this thought process and devising this master system (I&#8217;d use the word framework, but for personal reasons, I hate the word framework) is that I believe there&#8217;s something wrong with how scientists communicate. I&#8217;m not saying that scientists are doing everything wrong when it comes to communication. In fact, I think many things scientists do are right! Let me outline this in 3 points:</p>
<ol>
<li>The fundamental spirit of how scientists approach communication is perfect. The open-ness of scientific communication should never change. All scientists I know, not only recognize this fact, but probably worship that principle. I don&#8217;t think I&#8217;m teaching anyone, anything here.</li>
<li>The current use of copyright is dangerous. Basically, we&#8217;re going about our business, applying number 1 just above to our results, but giving our copyright away to scientific journals, some of which are looking to use it, as the <a href="http://www.prismcoalition.org/index.htm" target="_blank">PRISM</a> initiative shows us.</li>
<li>The tools and methods we use to disseminate our scientific results and ideas are outdated and inefficient. This is where my framework idea comes in. I&#8217;m really not looking at revolutionizing scientific communication (although I&#8217;ll claim it at some point so I make noise and people notice what I&#8217;m doing), but rather to evolve it to the next step. The underlying principle (number 1 above) will remain. Only the packaging and the speed at which it traves will change.</li>
</ol>
<p>Let me discuss points 1 and 2 a little here today. More explicitely, let me depart from the usual and try to take an idea from science and apply that to another field.</p>
<p>In number 1 above, I praise the principle of open-ness of scientific communication. What I&#8217;m saying is that the founding principle we use to do science is that anyone can take what I&#8217;ve done, scrutinize it, critic it, replicate it (in fact, we&#8217;re happy when someone redoes something we&#8217;ve done and confirms we&#8217;ve done it properly), expand on it, etc. All that scientists ask is that when you re-use what someone&#8217;s done, you mention who&#8217;s done it first, done it wrong, done it partially. Expressed in this way, it sounds a lot like the <a href="http://creativecommons.org/license/results-one?q_1=2&amp;q_1=1&amp;field_commercial=yes&amp;field_derivatives=yes&amp;field_jurisdiction=us&amp;field_format=&amp;field_worktitle=&amp;field_attribute_to_name=&amp;field_attribute_to_url=&amp;field_sourceurl=&amp;field_morepermissionsurl=&amp;lang=en_US&amp;language=en_US&amp;n_questions=3" target="_blank">attribution creative commons license</a>. What&#8217;s a creative commons license?</p>
<p>Simple. The <a href="http://creativecommons.org/" target="_blank">Creative Commons</a> is a non-profit organization whose sole purpose is to create lienses which can be used by content creators. These licenses come  in different forms, a machine readable form, a lawyer-ese form and a human-speak (for laymen) form. As a content creator, you select which rights you WANT to give to people over your work and you attach the appropriate license to your work. This indicates to potential (re-)users of your work &#8220;These are the things you can do with this copyrighted work.&#8221;</p>
<p>The attribution license says that you can re-use, use, distribute, mashup (the new buzzword on the internet), remash, paint over, trace over, deform and enjoy the current work. All you have to do is attribute the source properly. This is exactly what we do in science.</p>
<p>One point of clarification though. Legally, copyright extends over EXPRESSIVE WORKS and not over IDEAS AND FACTS. So technically, someone can take your paper, extract the actual data points and re-use that information. Information is not copyrightable. So people don&#8217;t even need to attribute the source. In this case, the &#8220;science code&#8221; goes beyond copyright. When re-using INFORMATION laid out by a previous scientist, we still attribute the source.</p>
<p>On the other hand, there are  behaviours scientists exhibit, which don&#8217;t respect copyright. For example, we often re-use images from other scientists and only attribute the source. In my master&#8217;s thesis, there are images from the phd thesis of a student at Caltech. I still attributed the source, of course. I&#8217;m sure I can pull loads of master&#8217;s/ph.d. thesis in my field with copies of images from older papers, probably from many recent papers. In the case where one pulls an image DIRECTLY from a copyrighted work and only attributes, one is technically breaking copyright law. Now, I doubt Caltech is going to sue me for using that image (or the copyright holder for that matter, whom I know well enough by now). In the end, using that image and simply attributing the source FEELS right. This is a case where using the creative commons attribution license would work well. This would have enabled me to use the image without worrying about the copyright detail. I still didn&#8217;t care, but technically I should have. Were I to be sued, I would argue fair use (as a critic of the work). Still I&#8217;m really not likely to be sued by Caltech for this.</p>
<p>This is where my point 2 comes in. We&#8217;re using our traditional distribution methods (archival journals and the such), knowing full well that we&#8217;re signing our copyright away in most cases, yet without caring about the consequences. Basically, because there have been no real consequences so far. Once in a while, there&#8217;s  the odd over-zealous journal staff who sees infringiment and sends a letter to the infringer without clearing it with a boss first. Yet, I&#8217;m not aware of anyone getting really screwed over this. I&#8217;m willing to bet most (all?) scientists are more worried of being discretited because of accusations of plagiarism than because of lawsuits over copyright infringiment.</p>
<p>So in light of this unwritten policy in the scientific domain (we could call it the no-sue poliy), why should we care? While the danger isn&#8217;t imminent, groups like <a href="http://www.prismcoalition.org/myth.htm">PRISM</a> are worrisome. They show that someone, somewhere cares. That person hasn&#8217;t used their right yet, but they know it exists. I don&#8217;t like the status quo, especially when I&#8217;m not in a situation of power. My solution to this is to say that while we devise a system to revamp our distribution methods, let&#8217;s take the opportunity to cut-out the middle-man and use licensing schemes which solve this issue. More on this next time.</p>
<p>For now, as promised, let me draw a parallel between what happens in the scientific world and what happens in the music world.</p>
<p>As I outlined above, the way science is done (on a global scale, not on a laboratory scale) is that we constantly re-use, re-hash, re-mash other scientists work. Joe A, in Italy in 1971 publishes a paper which is really interesting. He shows that a species of frogs in Madagascar has the ability to spontaneously change sex. (I&#8217;m making this up as I go along now, in case you hadn&#8217;t noticed.) Fast-forward to 2002, when Jane B, in South Africa, shows that all frogs have the genetic makeup to do this, it simply happens that only a fraction of those species have the need to use spontaneous sex change. (Again, it&#8217;s completely out of thin-air, just an example. I&#8217;m pulling this out of the script of a bad science-fiction/cataclysm movie right now.)</p>
<p>In the end, Jane B simply writes in her article that  &#8220;Joe A has previously shown that&#8230;&#8221; and maybe pastes in a graph from the original 1971 article, showing the main conclusions. Re-use of previous science to make new science.</p>
<p>What about music? Listen to this clip about the song &#8220;Amen Brother&#8221;.</p>
<p><object width="425" height="355"><param name="movie" value="http://www.youtube.com/v/sj0vfU0vFSs&#038;rel=1"></param><param name="wmode" value="transparent"></param><embed src="http://www.youtube.com/v/sj0vfU0vFSs&#038;rel=1" type="application/x-shockwave-flash" wmode="transparent" width="425" height="355"></embed></object></p>
<p>Basically, from the sampling of a few seconds of a rather unknown 1969 song, a whole genre of music was born. A spoon-full of copyright infringiment over a bed of creative re-use led to a whole genre of music. In the most basic sense, the birth of hip-hop was basically the same as the evolution of science.</p>
<p>Does the comparison really  apply? I would say that it does. Joe A might publish an article with a picture and say, &#8220;I have no idea what this means.&#8221; Jane B then comes along, realizes what the picture is, scans it from the paper, applies some image transformations to get some features out and say &#8220;Ah ah! It is now clear that the large feature in the image from the article of Joe A is &#8230;&#8221; Remember. FACTS are not copyrightable. EXPRESSIONS OF FACTS are copyrightable. Images are expressions of facts. Scientific images may be argued either way. They&#8217;re data, really, we (scientists) wouldn&#8217;t differentiate them from raw fact, at least conceptually. But they&#8217;re still images. In the modern scientific community, we wouldn&#8217;t think twice about this. We might phone up Joe A and say, &#8220;Look at this! I&#8217;ve figured it out!&#8221; Joe A will be happy. And so we&#8217;ll publish our new result, with attribution, feeling quite content. Unfortunately, Joe A has signed his copyright away to the <em>international journal of frogs </em>back in 1971. Not too unfortunate, because we don&#8217;t really enforce it. In comes PRISM&#8230; and I get a little worried. Not that much, but a little. And so I ask, given that we have the technology to solve this problem easily and make our system more efficient, why not?</p>
<p>Now, to give you something to chew on, think about what would happen to science if somehow, we weren&#8217;t allowed to re-use other scientists stuff. Think about what would happen if we started suing each others every time  re-use occured.</p>
<p>Now, having thought about that for a minute, think about what would have happened  to music if every DJ in the 80&#8242;s had been sued out of existence?</p>
<p>Consider the approach the mainstream expressive industry is taking to the application of copyright law. The &#8220;copyright should last forever and nobody should be allowed to use even a single second of my work withouth paying me&#8221; camp. Forward the clip above to the 14:00 mark and listen to what the author considers as the significance of learning the origin of the amen break. When samplers came to light, the industry in place let it slide. They may not have regarded the technology and its uses as viable in any way. Now, copying and sampling possibilities are at everyone&#8217;s fingertips. It doesn&#8217;t seem they&#8217;ll make that &#8220;mistake&#8221; twice.</p>
<p>Now, what if all musicians agreed to say that &#8220;You may reuse portions of my work for the purpose of sampling and creating new expressive works.&#8221; How would hip-hop and electronica evolve?</p>
<p><em>[Update 1: I edited this post to add some links to the PRISM webpage and the Creative Commons website. --CBK]</em><br />
<em>[Update 2: Fixed link to the youtube video. It seems wordpress' visual editor doesn't quite like the embed tag. --CBK</em></p>
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		<title>Check this out</title>
		<link>http://blog.charleskiyanda.com/2007/10/25/check-this-out/</link>
		<comments>http://blog.charleskiyanda.com/2007/10/25/check-this-out/#comments</comments>
		<pubDate>Thu, 25 Oct 2007 04:09:44 +0000</pubDate>
		<dc:creator>Charles Kiyanda</dc:creator>
				<category><![CDATA[Science is broken]]></category>

		<guid isPermaLink="false">http://blog.charleskiyanda.com/2007/10/25/check-this-out/</guid>
		<description><![CDATA[<p>I had seen this  a few days ago and, somehow, was too tired to realized how important it should be for me to read this. I&#8217;ve just skimmed it quickly and I like that some of what is being discussed there is what I have in mind. (I apologize in advance if you don&#8217;t quite <span style="color:#777"> . . . &#8594; Read More: <a href="http://blog.charleskiyanda.com/2007/10/25/check-this-out/">Check this out</a></span>]]></description>
			<content:encoded><![CDATA[<p>I had seen this  a few days ago and, somehow, was too tired to realized how important it should be for me to read this. I&#8217;ve just skimmed it quickly and I like that some of what is being discussed there is what I have in mind. (I apologize in advance if you don&#8217;t quite know what I have in mind, I&#8217;ve been jumping back and forth trying to find how to tackle this. This week, I&#8217;ll sit down and write formally what I actually have in mind. At least what I have in mind now. It keeps evolving.)</p>
<p>The site for the online symposium is <a href="http://itpolicy.princeton.edu/symposium/" target="_blank">here</a>. It&#8217;s basically a blog with many invited writers for a finite short period of time.</p>
<p>[Update 1: I'm reading on the site just now and it makes me feel good. I can't stop thinking (someone is sleeping next door, so I can't shout) "Yes! Yes! Finally, someone who's thinking the same thing I am!" Feels good to read this from established professors. At least, I'm not just some delusional idealistic phd student. At least, if it ends up being that I was too lazy to do it, someone else will do it before me and I'll be able to profit from it anyway.]</p>
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		<title>Of science and music</title>
		<link>http://blog.charleskiyanda.com/2007/10/25/of-science-and-music/</link>
		<comments>http://blog.charleskiyanda.com/2007/10/25/of-science-and-music/#comments</comments>
		<pubDate>Thu, 25 Oct 2007 03:26:35 +0000</pubDate>
		<dc:creator>Charles Kiyanda</dc:creator>
				<category><![CDATA[Music]]></category>
		<category><![CDATA[Science is broken]]></category>
		<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://blog.charleskiyanda.com/2007/10/25/of-science-and-music/</guid>
		<description><![CDATA[<p>After my last post, I had a comment by Alex, who didn&#8217;t believe one could compare science publications with musical records. I&#8217;ll give him right that there are many differences between the two, although I still think there&#8217;s one important parallel that can be drawn between the two.</p>
<p>First, here&#8217;s how it works when you publish a <span style="color:#777"> . . . &#8594; Read More: <a href="http://blog.charleskiyanda.com/2007/10/25/of-science-and-music/">Of science and music</a></span>]]></description>
			<content:encoded><![CDATA[<p>After my last post, I had a comment by <a href="http://blog.charleskiyanda.com/2007/10/21/unsprung-artists-and/#comments" target="_blank">Alex</a>, who didn&#8217;t believe one could compare science publications with musical records. I&#8217;ll give him right that there are many differences between the two, although I still think there&#8217;s one important parallel that can be drawn between the two.</p>
<p>First, here&#8217;s how it works when you publish a paper. Once your paper is accepted, you have to sign a form, transferring your rights to the journal. (I&#8217;m assuming the more common &#8220;traditional&#8221; journal. There are open-access journals, where you retain the copyright, but typically you have to give them away.) Editorial edits (grammar) are finished and the journal sends you a bunch of preprints to give to colleagues and to impress your mom. To be serious, I don&#8217;t think it really matters nowadays. You just end-up sending them the pdf with the proper citation information. Yeah, I know, I shouldn&#8217;t but their library probably subscribes anyway. It&#8217;s just easier this way than telling people to go click through twelve web pages just to get to your article. I guess you could send a link. Anyway, you get the idea. People get an electronic version of your paper and you end up with a pile of dust-gathering preprints (minus the one you sent to your mother). Once that&#8217;s done, to get access to your paper (technically), you&#8217;re supposed to go onto the journal website. Technically, if you&#8217;ve signed away your rights, you&#8217;re supposed to ask for permission before reusing a figure from your paper as well. Some journals (in fact, I would guess/hope most, but I haven&#8217;t done an exhaustive study) have &#8220;rules&#8221; in place so that people can re-use material for a certain purpose or the authors can reuse material if it&#8217;s in a publication owned by the same organization/company.</p>
<p>In any case, the point is that you sign away your rights and the journal then sells access to your paper to people, including to you. You, as a scientist, don&#8217;t get a dime from it. But you probably know that already.</p>
<p>Now my understanding of how the music industry currently works is that artists sign away certain rights to the label in exchange of financial support to produce one or more albums. These albums get sold, debts get repaid and, in the end, the artist really gets very little from the sale of the CD (or vinyls if you&#8217;re radiohead). The money artists make really comes from putting shows together, selling t-shirts, appearing in magazines, endorsing products in ads, etc. At least, that&#8217;s my understanding of it. I may be slightly wrong. Some artists may make more money from CD sales than I think. Still, I don&#8217;t think artists without 1 billion fans (and let&#8217;s face it, of all artists trying to make a living, superstars are a minority) really make much from every CD you sell. I don&#8217;t have hard data at this point, this is from reading journal articles left and right and meeting several artists (none of them superstars, mind you, so I can&#8217;t compare).</p>
<p>In any case, my point is that you have artists who produce music and labels who profit from the distribution of the actual music in album form.</p>
<p>This is where I see the similarity. In, both, the world of science and the world of music, we have people who make actual content (scientists write scientific papers and musicians record music) and people who wrap that content up in plastic and ship it to you to make money. In both cases, content distributors (scientific journals and record labels) profit from distributing the content, while content producers (the scientists and the artists) profit in some other derivative way.</p>
<p>This is where Alex&#8217;s criticism comes in. &#8221;</p>
<blockquote><p> Business chases profit, scientists chase prestige. Profit means you hoard as much as possible, releasing carefully controlled product to people for as much money as possible, build barriers for competitors, etc. Prestige means you try to distribute as widely as possible, collaborate with the best people possible, have the best and coolest ideas possible, etc. They lead to totally opposite outcomes.&#8221;</p></blockquote>
<p>I disagree. Artists (and I&#8217;m not implying record labels here, but really artists) are after both profit and prestige. They want to win a Juno award, or a grammy award, or get one of those platinum records. That&#8217;s not money, that&#8217;s &#8220;prestige&#8221;. Let&#8217;s call it recognition. Artists want to be told by others that they&#8217;re good. They want people to write books about them that say they created a whole new genre and revolutionized the world of music. Artists also want money. Who wouldn&#8217;t want a million dollars? Do artists (in general, if there&#8217;s such a thing) want money more than fame? I don&#8217;t know. I don&#8217;t quite care. Both money and fame are &#8220;profit&#8221; in a loose sense. You start out with goals, you do something, you get to your goals. You&#8217;ve profited from what you&#8217;ve done. Important to note is, as I&#8217;ve said up there, the money artists make (presumably) doesn&#8217;t come primarily from record sales, but through other means. Even more important to note is that people get to like an artist by listening to their music. This is what leads to the blog post I quoted the last time. As an artist, you want to get your music out there, by any means possible. You want everyone to get to listen to it. The most efficient way to do this used to be to sign to a label. They had huge distribution channels. They could get your albums sold in China and Europe while you were enjoying a beer in Canada. Labels still have huge distribution channels. But they&#8217;re no longer the biggest. Now, if your goal is to get your music out there to as many people as possible, you put it up for free on the internet. THAT gets you listeners.</p>
<p>Now in all this, the business model of the artist hasn&#8217;t changed. First, you find a way to get your music listened to by people, then you sell them concert tickets. The business model of the record labels changes, though. They&#8217;re less and less valuable to artists.</p>
<p>Now, just as equally as artists are after both monetary profit and recognition, so are scientists. Hold on, are you so sure? Yes. Nobody has any trouble recognizing that scientists want recognition. We all would like a nobel prize, or a medal from a mathematical society. Scientists also want money. Seriously. Some more than others I&#8217;m sure. Still, when applying for a research/teaching position, everybody negotiates the best deal. So you&#8217;re not doing this out of the kindness of your own heart. You&#8217;re not going to tell your kids you&#8217;ll never be able to take them to disneyworld because you have a greater goal to achieve. Some want millions and whole building for them and their graduate students. Some just want to be able to afford a decent living and do interesting stuff. Some may not want money at all really and would be fine living in the basement of the school. It&#8217;s irrelevant to the discussion. Both are ways of &#8220;profiting&#8221;. You start out with goals, you do something, you end up closer to your goal. You&#8217;ve gotten something out of it, whether money or fame, that&#8217;s your profit.</p>
<p>Now, the business model of the scientist hasn&#8217;t really changed. You do research. You write out papers. You get the papers out there. You get more research contracts/medals/students/book deals/newspaper articles/biography/office space/lab space/money from your employer so you don&#8217;t end up at another university (pick as many as you&#8217;d like).  It used to be that scientific journals were the best way to get your stuff out there. They&#8217;d bundle the papers together and they were quite good at shipping these bundles around the world. Not so anymore. The internet can get your stuff out there (once it&#8217;s written) faster than any scientific journal can. So the business model of scientists hasn&#8217;t changed. The business model of scientific journals, though&#8230; well&#8230; hasn&#8217;t changed yet.</p>
<p>One small detail remains in favour of the traditional scientific journals. Peer-review. Somehow we still believe that these journals are just better than anybody else at getting stuff peer-reviewed. Now, there is something which doesn&#8217;t happen in the music world. That&#8217;s where I say, the stage is just ripe for a new paradigm. A system which allows you, even a single person (or more realistically a group of a few people) a peer-reviewed scientific journal. Or a non-peer-reviewed journal if you&#8217;d so like. A framework which lets you also know, as a reader, what you might be interested to read.</p>
<p>More on that later.</p>
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		<title>Unsprung Artists and </title>
		<link>http://blog.charleskiyanda.com/2007/10/21/unsprung-artists-and/</link>
		<comments>http://blog.charleskiyanda.com/2007/10/21/unsprung-artists-and/#comments</comments>
		<pubDate>Sun, 21 Oct 2007 16:19:27 +0000</pubDate>
		<dc:creator>Charles Kiyanda</dc:creator>
				<category><![CDATA[Music]]></category>
		<category><![CDATA[Science is broken]]></category>

		<guid isPermaLink="false">http://blog.charleskiyanda.com/2007/10/21/unsprung-artists-and/</guid>
		<description><![CDATA[<p>I was strolling around the tube, reading the different blogs I like to read when I came across this posting by an internet company, SONGboost. What are they saying?</p>
<p> If you are an unsprung artist (unsigned, unknown, undiscovered, emerging) and your wondering how to make money from music, you should not plan your future around selling CDs <span style="color:#777"> . . . &#8594; Read More: <a href="http://blog.charleskiyanda.com/2007/10/21/unsprung-artists-and/">Unsprung Artists and <a href=http://www.songboost.com&#8221;SONGboost.com</a></span>]]></description>
			<content:encoded><![CDATA[<p>I was strolling around the tube, reading the different blogs I like to read when I came across <a href="http://www.unsprungartists.com/unsprung_wisdom/2007/9/7/2007-paid-downloads-will-cease-reason-3.html" target="_blank">this posting</a> by an internet company, <a href="http://www.songboost.com" target="_blank">SONGboost</a>. What are they saying?</p>
<blockquote><p> If you are an unsprung artist (unsigned, unknown, undiscovered, emerging) and your wondering how to make money from music, you should not plan your future around selling CDs or digital downloads. In fact, holding out for your portion of a $.99 cent download may be hurting your career.</p></blockquote>
<p>They go on to show, with some back of the enveloppe math, that at a profit margin of .69$ a song, breaking even on an album which cost 100k$ (50k$ in production costs and 50k$ in advertising) would require 142 000 downloads. According to their estimate, this would require your band to be in the top 2000 artists in the english speaking world.</p>
<p>More back of the enveloppe calculation takes home the point that there&#8217;s a simpler alternative.</p>
<blockquote><p>Because nobody completely appeals to 100% of the population, your music needs to be in 200,000 to 300,000 iPods now, to convince and convert 5,000 fans (2 to 2.5% conversion rate) to pay to attend your show, to buy a shirt, buy a hat and/or visit your website numerous times over the next year.</p></blockquote>
<p>Omitted but implied is that this alternative is much closer to reach than the former. Their final conclusion is interesting. Basically, you should treat digital music as a publicity (I would imagine this to lower to marketing costs, so your initial investment is then more in the line of 50k$) and get it out there to make fans and get them to your shows.</p>
<blockquote><p>I believe you should put your music on every site/system, legal and not, in the world. You should turn on the download option and deploy download buttons everywhere you can. You need spins to get to the point where you can sell shit that has a higher margin than .69 cents. The CD is dead, digital music is here to stay, illegal file sharing will live on, and the sun will shine tomorrow. Go for exposure and get to a point where you can make money; if you hold out for digital music download revenue, that business may not be around in three years.</p></blockquote>
<p>Is this correct? I don&#8217;t know. Is it an interesting point of view? Absolutely. Thinking about this issue recently I came to the (uninformed) conclusion that this shift is happening right now, though. My understanding is that, traditionally, the music labels would take most of the profits from music sales and that artists would take more profits (I don&#8217;t know if it&#8217;s most) from shows and other stuff they sell (shirts, hats, etc). So as far as the artists are concerned, the model hasn&#8217;t changed. Your  income is still from shows and what not. The problem is for the music labels, whose business model is basically dead. We&#8217;re now able to distribute music in far more countries at once, in far more convenient form, at much faster speeds and for much lower cost then they could by pressing little plastic coasters and packaging them in 3 layers of plastic</p>
<p>How does that relate to the distribution of knowledge in the scientific world? Good question. I don&#8217;t think the analogy is very easy to make, mostly for two reasons:</p>
<ol>
<li>There isn&#8217;t a direct monetary gain for scientists from their knowledge. Basically, we don&#8217;t sell papers. Well, we kind of do. We sell reports and teaching time, the idea being that if the papers we&#8217;ve written before were good, we&#8217;re likely to produce more good ones in the future. Still, we don&#8217;t perform our papers, really, in the same sense as artists do.</li>
<li> The distribution system has been intimately intertwined with the appreciation system. And that&#8217;s not fun. So, depending on how your stuff gets out there sort of influences how good people think you are. We know it&#8217;s not right. Just because nature publishes your stuff doesn&#8217;t actually make it right. It just makes it published in nature. We assume that nature has more stringent rules and that nothing gets passed them (or at least less does). It may well be so. I&#8217;ll have to look around and see if someone has a compilation of # of retractions per journal or something similar compared with the impact factor of the journals. (The current &#8220;good&#8221; method of assessing whether you&#8217;re writing crap or not. Well, really, it&#8217;s a way of saying whether people are reading the crap you write, not really how good it is, but anyway. It&#8217;s a proxy for how good we are and we don&#8217;t really challenge it these days.)</li>
</ol>
<p>In any case, I&#8217;ll have to dwell on this analogy for a little and write more later on.</p>
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		<title>An interesting talk</title>
		<link>http://blog.charleskiyanda.com/2007/10/12/an-interesting-talk/</link>
		<comments>http://blog.charleskiyanda.com/2007/10/12/an-interesting-talk/#comments</comments>
		<pubDate>Fri, 12 Oct 2007 05:23:33 +0000</pubDate>
		<dc:creator>Charles Kiyanda</dc:creator>
				<category><![CDATA[Science is broken]]></category>

		<guid isPermaLink="false">http://blog.charleskiyanda.com/2007/10/12/an-interesting-talk/</guid>
		<description><![CDATA[<p>I saw a talk this week, by John Fleck, science writer for the Albuquerque Journal. It was an interesting talk by all measures.  Titled &#8220;Communicating Science: What the News Media Can Do, and What It Can&#8217;t&#8221;, I would have entitled it &#8220;Science Writing for General Audience Publication: How I do my job&#8221;.</p>
<p>Of most interest to <span style="color:#777"> . . . &#8594; Read More: <a href="http://blog.charleskiyanda.com/2007/10/12/an-interesting-talk/">An interesting talk</a></span>]]></description>
			<content:encoded><![CDATA[<p>I saw a talk this week, by <a href="http://www.abqjournal.com/abqnews/index.php?option=com_content&amp;task=blogcategory&amp;id=18&amp;Itemid=31" target="_blank">John Fleck</a>, science writer for the Albuquerque Journal. It was an interesting talk by all measures.  Titled &#8220;Communicating Science: What the News Media Can Do, and What It Can&#8217;t&#8221;, I would have entitled it &#8220;Science Writing for General Audience Publication: How I do my job&#8221;.</p>
<p>Of most interest to me, was the discovery that, while trained in philosophy, this man was quite well versed or at the very least aware of what science really is, how it&#8217;s done, how to approach it, etc. Assuming he&#8217;s a representative sample of science writers,  it made me realize that the divide between those who do science and those it impacts may not be in the news media (or the middle man, as I&#8217;d like to call it), but rather between those who write for news media and those who read it.</p>
<p>In developping (well, thinking about) the great idea I&#8217;ve been outlining on these pages, I&#8217;ve been thinking it should include tools for scientists to communicate (or at least to motivate scientists to communicate) outlying scientific ideas (to paraphrase a dicotomy Fleck used between the &#8220;core of a scientific subject&#8221; and the &#8220;outlying science in a field&#8221;) to the general public. In that sense, I&#8217;m suggesting we do exactly what I hinted at when asking Fleck a question after his talk. Cut the middle-man.</p>
<p>Traditionally, we have worked in a &#8220;proxyfied&#8221; way. I make science. I speak to a reporter. The reporter speaks to the people. If you&#8217;ve seen the movie &#8220;Office Space&#8221; (and if not, I highly recommend it), you might recognize one of it&#8217;s characters.</p>
<blockquote><p>&#8220;I deal with the clients so the engineers don&#8217;t have too. I have people skills! What&#8217;s wrong with you people! Can&#8217;t you see that!&#8221;</p></blockquote>
<p>I was happy to hear Fleck agree with me and encourage the audience to communicate directly to the public, blog,&#8230; I was concerned, although I did expect it, to hear him admit that, regarding communicating scientific developments to the general public,&#8221;It&#8217;s hard.&#8221;</p>
<p>All in all a good talk, although I would have like something a bit more confrontational. I would have liked Fleck to bring forward his vision for how we ought to bridge the divide between the world and the geeks. I like to think my idea could be it. (I often have visions of grandeur and live happily despite it.) We&#8217;ll see, although for that, I&#8217;ll need to find someone who&#8217;s much better at coding these things than I&#8217;ll ever be. Anyone interested? The job is open. Flexible hours, can work from home, you get an equal share of the company and no pay. Deal?</p>
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		<title>It&#8217;s more than time!</title>
		<link>http://blog.charleskiyanda.com/2007/08/28/its-more-than-time/</link>
		<comments>http://blog.charleskiyanda.com/2007/08/28/its-more-than-time/#comments</comments>
		<pubDate>Tue, 28 Aug 2007 04:00:10 +0000</pubDate>
		<dc:creator>Charles Kiyanda</dc:creator>
				<category><![CDATA[Science is broken]]></category>

		<guid isPermaLink="false">http://blog.charleskiyanda.com/2007/08/28/its-more-than-time/</guid>
		<description><![CDATA[<p>During my daily (who am I kidding, hourly) slashdot browsing, I came about this commentary regarding a new advocacy group lobbying for traditional commercial scientific journals.. The  lobbying group is called Prism. They&#8217;re a Partnership for Rrsearch Integrity in Science and Medicine. The main point of interest on /. was about how this lobby group <span style="color:#777"> . . . &#8594; Read More: <a href="http://blog.charleskiyanda.com/2007/08/28/its-more-than-time/">It&#8217;s more than time!</a></span>]]></description>
			<content:encoded><![CDATA[<p>During my daily (who am I kidding, hourly) <a href="www.slashdot.org">slashdot</a> browsing, I came about <a href="http://yro.slashdot.org/article.pl?sid=07/08/27/2228203&amp;from=rss">this commentary regarding a new advocacy group lobbying for traditional commercial scientific journals.</a>. The <a href="http://www.prismcoalition.org/index.htm"> lobbying group is called Prism.</a> They&#8217;re a Partnership for Rrsearch Integrity in Science and Medicine. The main point of interest on /. was about how <a href="http://scienceblogs.com/cognitivedaily/2007/08/opening_knowledge_or_locking_i.php">this lobby group is all about getting copyright respected and yet puts up watermarked images from Getty on their website, suggesting they&#8217;re using unpaid images.</a> I&#8217;m not so much interested in that detail, mainly since they seem to have corrected their website and have put up non-watermarked images. So either their web developer was stupid or didn&#8217;t have enough coffee that morning and picked the wrong file for the website or they saw what&#8217;s being said on the internet and quickly went to Getty, apologized, paid and went on their merry way. Either way,they are wrong in so many other ways, it&#8217;s funny even without the pictures!</p>
<p>I quote from their website, the issue of interest to Prism is to &#8220;protect the quality of scientific research&#8221;. This issue is of vital concern to &#8220;scientific, medical and other scholarly researchers who advance the cause of knowledge; the institutions that encourage and support them; the publishers who disseminate, archive and ensure the quality control of this research; and the physicians, clinicians, engineers and other intellectual pioneers who put knowledge into action.&#8221;</p>
<p>A nice listing of basically anyone involved in medical science, were it not for the simple problem that Prism was established by &#8220;The Executive Council of the Professional &amp; Scholarly Publishing Division of the Association of American Publishers (AAP)&#8221; and doesn&#8217;t list anybody else as a member. You can list anyone you want, if you&#8217;re only comprised of &#8220;pay-for-access&#8221; scientific journals, then those are the interests you&#8217;re representing.</p>
<p>I really like how they describe themselves everywhere that they&#8217;re an advocacy group, a partnership, a coalition (of one group, sic!) and so on. Especially since they clearly state that their group&#8217;s role is to &#8220;educate policy makers and the American people about the risks posed by government intervention in scholarly publishing.&#8221; It sounds like lobbying, it looks like lobbying, it smells like lobbying. I&#8217;m going to commit myself and just say it. I think they&#8217;re a lobbying group. There, I said the evil word. <img src='http://blog.charleskiyanda.com/wp-includes/images/smilies/icon_smile.gif' alt=':)' class='wp-smiley' /> </p>
<p>From the political-talk on their website, it seems that their interests are really aligned with mine. They want to &#8220;advocate sustainable business models to ensure continued investment and innovation in these essential contributors to scientific objectivity and integrity.&#8221;</p>
<p>Wow! How great! That&#8217;s exactly what I want to do! I want to start a website that innovates in how scientists distribute their scientific results, discuss them, rate them and how good/bad science is determined. I definitely want to innovate, since I want to propose an alternative to the current peer-review system! I also want good science (objective science done with integrity, sounds good) to prevail over bad science (data fudging, unethically paying women for parts of their body, you know, bad stuff). So why do they and I clash? Ah yes&#8230; I believe that scientists should keep the copyright of the articles they publish and not give it to the person who distributes it. It&#8217;s unfortunate that the entire leverage that scientific (commercial or traditional) journals have in terms of a business model is the copyright they get to the articles they distribute. Take that away and their business model crumbles. There are 4 interesting points on their main page (if you&#8217;re a lobbying group, you should put what you have most at heart right there in the front, right? Get people to &#8220;get it&#8221; right from the start), so let&#8217;s go through them one by one.</p>
<p>&#8220;What&#8217;s at risk?&#8221; they ask. Their answer is that we&#8217;re putting at risk the integrity of scientific research. &#8220;How?&#8221;, might you ask. Again, they&#8217;re quick to answer.</p>
<ul>
<li>&#8220;By undermining the peer review process by compromising the viabilty of non-profit and commercial journals that manage and fund it.&#8221;</li>
</ul>
<p>Ok, that one is nice. There are numerous examples of research that went through peer-review. The classical peer-review. It came back with the holy seal of approval from &#8220;the community&#8221;, i.e. 3 experts (well, often times one of their graduate student)  and one editor. The seal said &#8220;ACCEPTED&#8221;. No discussion after that, it goes through. Except the data was made up, it was generated by a random sentence generator program, made up by MIT undergrads or it was unethical research with fudged data, etc. There are even more scientists voicing their opinion, saying that peer-review is not so good. Great research gets rejected because someone feels it&#8217;s too much in contradiction of the accepted, current view. Nevermind that they could be right, they just clash too much with what&#8217;s accepted right now. Peer-review isn&#8217;t perfect, let&#8217;s not hold onto it to dear life, like it&#8217;s the only thing keeping modern science together.</p>
<ul>
<li>By &#8220;opening the door to scientific censorship in the form of selective additions to or omissions from the scientific record&#8221;.</li>
</ul>
<p>Yeah, that&#8217;s a valid concern. Except I fail to see how commercial journals are playing a positive role there. You see, I see doctoring of reports in, like, the IPCC reports where the sponsoring agencies cut out stuff or add stuff. I&#8217;ve seen governmentally doctored reports. Except those reports <strong>haven&#8217;t gone through peer review!</strong> So this is a problem of how the government operates. Yes, we should tell the government that it can&#8217;t edit reports that come out of publicly funded research. Unfortunately for prism, it has nothing to do with commercial peer-reviewed journals.</p>
<ul>
<li>By &#8220;subjecting the scientific record to the uncertainty that comes wtih changing federal budget priorities and bureaucratic meddling with definitive versions&#8221;.</li>
</ul>
<p>Let me tell you&#8230; I work at a national laboratory&#8230; if scientists aren&#8217;t being &#8220;subjected to the uncertainty that comes wtih changing federal budget priorities&#8221;&#8230; Seriously, it&#8217;s ugly. Congress hasn&#8217;t bothered telling us in the last 18 months what our priority should be. We could get shut down&#8230; Talk about uncertainties. What happens to all the reports we have that are unclassified and published on the lab web pages&#8230; Or maybe they mean to say that all open-access journals (ah yes, if you read on their webpage carefully, that&#8217;s really what they&#8217;re after! Open-access is bad!) are going to be funded by the government and that if the government stops funding them, they&#8217;re going to shut down the webpages? First of all, it&#8217;s not clear that all open-access journals are going to be 99.9% government funded and the answer is easy. Leave the copyright to the author! If my website closes, the author is free to distribute his work somewhere else! I reckon my website isn&#8217;t going to close though. <img src='http://blog.charleskiyanda.com/wp-includes/images/smilies/icon_smile.gif' alt=':)' class='wp-smiley' /> </p>
<ul>
<li>By &#8220;introducing <strong>duplication</strong> and <strong>inefficiencies</strong> that will divert resources that would otherwise be dedicated to research&#8221;. [emphasis in the original text]</li>
</ul>
<p>Right&#8230;. Inefficiencies&#8230; So let me get this straight. Two years to get a paper published, in 2007, with the accessibility of the internet, is efficient?!?! Seriously?! Okay, I&#8217;m being a bit extreme. What I&#8217;ve seen on average is 12 months. Still. A year! If you want to publish a paper today, you have to surrender your copyright (which  means you have to ask for permission if you want to use a figure in a presentation), you&#8217;re giving them money (there are journals who make you pay to get the paper published <strong>and</strong> to get access to their material. You just try and get a color picture in there), they take 12-18 months to get your stuff published and they call themselves efficient?! Funny stuff.</p>
<p>Sorry José, but I&#8217;m going to keep working on my idea. I think I&#8217;ve got something here.</p>
<p>If you want a more detailed and more intelligent rebuttal of prism, go <a href="http://www.earlham.edu/~peters/fos/2007_08_19_fosblogarchive.html#365179758119288416"> see here. </a>Those arguments turn around &#8220;this lobbying effort is a PR stunt and their arguments are full of misinformation, half-truth, and fear-mongering.&#8221; I agree with everything that&#8217;s said. I go a step further, by saying that peer-review is broken (at least to a certain extent) and there&#8217;s a possibility to make something that&#8217;s more efficient. That part of my argument isn&#8217;t really needed to show that prism is no good, but I make it anyway. It&#8217;s my stick, you know?</p>
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		<title>It is time</title>
		<link>http://blog.charleskiyanda.com/2007/08/19/it-is-time/</link>
		<comments>http://blog.charleskiyanda.com/2007/08/19/it-is-time/#comments</comments>
		<pubDate>Sun, 19 Aug 2007 17:36:44 +0000</pubDate>
		<dc:creator>Charles Kiyanda</dc:creator>
				<category><![CDATA[Science is broken]]></category>

		<guid isPermaLink="false">http://blog.charleskiyanda.com/2007/08/19/it-is-time/</guid>
		<description><![CDATA[<p>If I&#8217;m going to be serious about this new way of disseminating science, it has to start now! I just saw on slashdot that a new science site, which they titled as &#8220;YouTube for Science&#8221; had started. It&#8217;s called SciVee. This is not exactly what I was thinking of (so I haven&#8217;t been scooped yet, pfiou!), <span style="color:#777"> . . . &#8594; Read More: <a href="http://blog.charleskiyanda.com/2007/08/19/it-is-time/">It is time</a></span>]]></description>
			<content:encoded><![CDATA[<p>If I&#8217;m going to be serious about this new way of disseminating science, it has to start now! I just saw on <a href="http://science.slashdot.org/article.pl?sid=07/08/19/1328253&amp;from=rss">slashdot</a> that a new science site, which they titled as &#8220;YouTube for Science&#8221; had started. It&#8217;s called <a href="http://www.scivee.tv/">SciVee</a>. This is not exactly what I was thinking of (so I haven&#8217;t been scooped yet, pfiou!), but it has elements of what I&#8217;d like to see (so it&#8217;s dangerously close, bummer!). If I understand well, then SciVee allows you to <a href="http://www.scivee.tv/help/view/46">upload a video (or just audio) of yourself talking about your paper and you can synchronize it with plots from your paper.</a> This isn&#8217;t what I really had in mind, but it&#8217;s getting close. Their system has some limitations.</p>
<p>For starters, it&#8217;s looking at papers that have gone through the classical peer-review process. I&#8217;m aiming at something that, ultimately, can bypass the classical peer-review process. Conceptually, it would be easy to extend the SciVee service to include papers which haven&#8217;t gone through the peer-review process. You&#8217;re already uploading a video, it&#8217;s not much different to upload a paper. What&#8217;s harder then, is how do you determine what&#8217;s a good paper from a bad paper then? Their system is probably not really set-up for that. Plus they don&#8217;t have a review process and the standard &#8220;click here to make this paper (or SciVee as they call it) a favorite&#8221; is not good enough for scientific publications.</p>
<p>In the same vein as the previous comment, their uploading and reviewing process is <a href="http://www.scivee.tv/uploadvideo">linear</a>. I believe there is a way to rate and comment on the videos of other users (from the explanation, it&#8217;s unclear whether you&#8217;re rating the video or the science, so would you rate low a bad video of bad science?), but it&#8217;s what I&#8217;d call a direct user input. You look at a video and you rate how much you think it&#8217;s worth. Let&#8217;s say, for the sake of the example, that it&#8217;s a 5 point scale. You would rate something 3/5 or 4/5. Any such system has several drawbacks. One is that you&#8217;re not always sure that users understand or at least share the same rating scale. 4/5 for me might be an outstanding paper with 5/5 being nobel prize material. 4/5 for you may be an average paper with 5/5 being anything between a really good paper and Nobel prize material. This makes such a scale less relevant. What I&#8217;d propose is to have a system whereby users can communicate with each other about the different papers available (or the SciVees as they call them). Papers are then rated based on how people interact with each other about those papers. If a paper gets lots of positive recommendations between users it gets rated higher. There also seems to be a system to comment on a particular SciVee. I don&#8217;t like comments as a main way of determining the value of a piece of work. I really don&#8217;t want to have to sift through 12 billion comments before I can decide whether the work was well done.</p>
<p>So far their system isn&#8217;t a community per say. Like I said, it&#8217;s linear. You upload, people download. Sometimes they comment and review. In their defense, they have a community aspect on the way. You can sign-up as a beta tester.</p>
<p>I should point out that I&#8217;m saying all of this as someone who hasn&#8217;t used the site as an author. One of the big drawbacks of the site right now is that you can only use it with papers in open access journals. The journals of PLoS are probably much much easier to use with this system. I don&#8217;t have papers in open access journals and more so not in PLoS journals. They do say that they&#8217;ll, at some point, accept getting abstracts from articles published in traditional journals (not open-access). So the expansion of their system relies on people publishing in open-access journals and with licensing options that permit re-using the material.</p>
<p>So like I said, it&#8217;s a good idea. It&#8217;s not completely MY good idea, but it&#8217;s a good idea. So whatever it is I want to do, I have to do it NOW! This definitely has the potential, with some added functions and maybe a complimentary service from someone else, to fill the niche I&#8217;m looking at. I still think by-passing the traditional peer-review system is the way to go. Not to abolish peer-review, but to change it drastically. The greatest hurdle of such a new service will be community acceptation. The traditional peer-review system has been used for a long time as a way to validate the worth of individual scientists. The community is probably not going to let go very quickly, so giving the right incentives to use the new system is going to be important.</p>
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		<title>journal bugs</title>
		<link>http://blog.charleskiyanda.com/2007/08/09/journal-bugs/</link>
		<comments>http://blog.charleskiyanda.com/2007/08/09/journal-bugs/#comments</comments>
		<pubDate>Thu, 09 Aug 2007 15:16:42 +0000</pubDate>
		<dc:creator>Charles Kiyanda</dc:creator>
				<category><![CDATA[Science is broken]]></category>

		<guid isPermaLink="false">http://blog.charleskiyanda.com/2007/08/09/journal-bugs/</guid>
		<description><![CDATA[<p>There&#8217;s something that bugs me about journal papers. Something that bugs me deeply, to the point that I really dislike writing papers. Part of it is stems from my personnal interests. I&#8217;ve always liked to do puzzle. I like to collect different &#8220;mind patience games&#8221; (I know this in french as jeux de patience, the translation <span style="color:#777"> . . . &#8594; Read More: <a href="http://blog.charleskiyanda.com/2007/08/09/journal-bugs/">journal bugs</a></span>]]></description>
			<content:encoded><![CDATA[<p>There&#8217;s something that bugs me about journal papers. Something that bugs me deeply, to the point that I really dislike writing papers. Part of it is stems from my personnal interests. I&#8217;ve always liked to do puzzle. I like to collect different &#8220;mind patience games&#8221; (I know this in french as jeux de patience, the translation isn&#8217;t obvious to me). Solving these mind-benders always gives me great joy. In a sense, I think I approach science the same way. I like to reach &#8220;cute&#8221; milestones. They&#8217;re like little mind-benders. I don&#8217;t really like writing a paper telling people how I managed to get the peg outside of the wooden rings. Therein lies part of what bugs me about writing papers. Nonetheless, there is something else.</p>
<p> I think part of what bugs me about writing papers, is three-folds:</p>
<ol>
<li> <strong>The rigid structure:</strong> You must write a paper in a particular tone. You must write a paper in a succession of sections that are always the same. You must use a general, non-descriptive, pompous title, like &#8220;Modelling of couch potato behavior using a stochastic TV model.&#8221; If you use a title with a question mark, like, &#8220;Do couch potatoes have different social rules?&#8221;, you are deemed a heretic. Don&#8217;t try to do this before you are 55 and have 25 years of experience in the field.</li>
<li><strong>It has to fit within x pages:</strong> This is less true of journal papers than conference papers. Maybe this just has to do with the rigid strucure.</li>
<li><strong>It takes 2 years to take a paper out:</strong> This is just ridiculous. Today, with the internet, there&#8217;s simply no reason for a paper to take this long to be published. Just absolutely none.</li>
</ol>
<p>There are probably other things that bug me about journal papers. I just can&#8217;t think of them right now.</p>
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